PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g16010.1.p
Common NameBRADI_1g16010, LOC100833769
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 191aa    MW: 19993.6 Da    PI: 8.6925
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g16010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00065981123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C  Cgk F +   L  H ++H
  Bradi1g16010.1.p 59 FRCMVCGKAFASYQALGGHKSSH 81
                      89**********99999999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-115883IPR007087Zinc finger, C2H2
SMARTSM003550.0455981IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.68E-959131No hitNo description
PROSITE profilePS5015711.7595986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-4108131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.084109131IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-11109132IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.263109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVVAALELSL SLSLPTPSAA PALSKDDYLA ICLAALANTR GHVASKWCPP APAAEELRFR  60
CMVCGKAFAS YQALGGHKSS HRKSPPAASA AADNSQSYET SSGGSSGPHQ CTICGRGFST  120
GQALGGHKRC HYWDGTSVSV SANSASGVTT RRNLFDLNLL PVPESVGIKR WAREEEEEVQ  180
SPLPAKKLRV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3582286e-31AK358228.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071H17.
GenBankFP0940706e-31FP094070.1 Phyllostachys edulis cDNA clone: bphyem106f16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562378.11e-138PREDICTED: zinc finger protein ZAT10-like
TrEMBLI1GQQ91e-138I1GQQ9_BRADI; Uncharacterized protein
STRINGBRADI1G16010.11e-137(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-30salt tolerance zinc finger